Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yabJ_1Endoribonuclease L-PSP. (127 aa)    
Predicted Functional Partners:
tdcB
L-threonine dehydratase catabolic TdcB.
 
 0.909
spoT
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.869
yecD
Isochorismatase.
  
 
 0.744
uup_1
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
       0.714
Lgor_1260
Hypothetical protein.
       0.714
budB
Acetolactate synthase; Belongs to the TPP enzyme family.
    
  0.706
rpoZ
RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
       0.685
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 
 0.660
yicC
Putative stress-induced protein.
       0.653
trpE
Anthranilate synthase.
    
  0.627
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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