STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysPAmino acid (lysine) permease. (493 aa)    
Predicted Functional Partners:
yveA_3
Amino acid permease.
  
  
  0.723
yveA_1
Amino acid permease.
  
  
  0.716
dtpA_4
Hypothetical protein.
  
     0.601
yhiP
Transporter.
  
     0.553
ydgR
Peptide transport protein.
  
     0.521
dtpA_3
Proton-dependent oligopeptide transporter (POT family).
  
     0.473
dtpA_1
Proton-dependent oligopeptide transporter (POT family).
  
     0.449
gadC_2
Amino acid antiporter.
  
  
  0.444
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.