STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1294Signal peptide protein. (90 aa)    
Predicted Functional Partners:
Lgor_1291
Hypothetical protein.
 
  
 0.890
Lgor_1292
Hypothetical protein.
 
  
 0.877
Lgor_2006
Hypothetical protein; Belongs to the UPF0276 family.
 
  
 0.874
cyaA_1
Adenylate cyclase.
       0.869
Lgor_1608
Hypothetical protein.
 
  
 0.850
Lgor_2005
Hypothetical protein.
 
  
 0.844
Lgor_1295
Thermostable carboxypeptidase 1; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
       0.714
Lgor_1296
Putative S-isoprenylcysteine methyltransferase.
       0.505
trbI
Conjugal transfer protein trbI.
   
    0.493
trbG
Conjugal transfer protein trbG precursor.
   
    0.493
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.