Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yccXAcylphosphatase. (91 aa)    
Predicted Functional Partners:
pta_1
Phosphate acetyl/butaryl transferase.
    
 0.893
ackA
Acetate kinase (Acetokinase); Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.881
gatA_2
Amidase.
    
  0.862
ywdH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.859
pta_2
Phosphate acetyl/butaryl transferase.
    
 0.763
ydiI
Esterase.
       0.737
Lgor_1309
Hypothetical protein.
 
     0.634
nylA_1
Amidase.
    
  0.624
nylA_2
Amidase; Belongs to the amidase family.
    
  0.624
budB
Acetolactate synthase; Belongs to the TPP enzyme family.
     
 0.623
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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