STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
com127 kDa outer membrane protein. (263 aa)    
Predicted Functional Partners:
lidC
Thiol:disulfide interchange protein DsbD.
  
 
 0.787
dsbD_2
Thiol:disulfide interchange protein.
  
 
 0.787
glyS
glycyl-tRNA synthetase beta chain.
     
 0.750
dsbB
Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.
  
 
 0.740
glyQ
Glycyl tRNA synthetase, alpha subunit.
       0.716
rsmJ
SAM-dependent methyltransferase; Specifically methylates the guanosine in position 1516 of 16S rRNA.
       0.603
uvrD
DNA helicase II.
     
 0.599
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.
    
  0.518
Lgor_2755
Hypothetical protein.
  
     0.502
pip
Proline iminopeptidase; Belongs to the peptidase S33 family.
       0.444
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.