STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimV_1Transmembrane Tfp pilus assembly protein FimV. (788 aa)    
Predicted Functional Partners:
rpoE
Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.860
pilN
Tfp pilus assembly protein PilN.
  
    0.756
cyaB_3
Guanylate/adenylate cyclase.
  
 
 0.723
pilP
Tfp pilus assembly protein PilP.
  
    0.719
legA
Ankyrin-repeat containing protein, substrate of the Dot/Icm secretion system.
  
     0.713
Lgor_1147
LysM domain-containing protein.
  
   
 0.705
letS_1
Legionella transmission sensor LetS.
  
  
 0.701
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
     0.701
Lgor_1521
Hypothetical protein.
  
     0.686
pilO
Tfp pilus assembly protein PilO.
  
  
 0.684
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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