Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lgor_1518 | djlA | Lgor_1518 | Lgor_1664 | Putative iron-sulpher cluster proteins NifU. | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.981 |
| Lgor_1518 | dnaK | Lgor_1518 | Lgor_1186 | Putative iron-sulpher cluster proteins NifU. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.917 |
| Lgor_1518 | iscS | Lgor_1518 | Lgor_1517 | Putative iron-sulpher cluster proteins NifU. | Cysteine desulfurase. | 0.999 |
| Lgor_1518 | nsrR_1 | Lgor_1518 | Lgor_0509 | Putative iron-sulpher cluster proteins NifU. | Rrf2 family transporter protein. | 0.624 |
| Lgor_1518 | sufA | Lgor_1518 | Lgor_1519 | Putative iron-sulpher cluster proteins NifU. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.930 |
| Lgor_1518 | sufB | Lgor_1518 | Lgor_0508 | Putative iron-sulpher cluster proteins NifU. | Cysteine desulfurase. | 0.761 |
| Lgor_1518 | sufC | Lgor_1518 | Lgor_0507 | Putative iron-sulpher cluster proteins NifU. | Component of SufBCD complex, ATP-binding component of ABC superfamily. | 0.890 |
| Lgor_1518 | yfhQ | Lgor_1518 | Lgor_1516 | Putative iron-sulpher cluster proteins NifU. | Methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. | 0.791 |
| djlA | Lgor_1518 | Lgor_1664 | Lgor_1518 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Putative iron-sulpher cluster proteins NifU. | 0.981 |
| djlA | dnaK | Lgor_1664 | Lgor_1186 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.982 |
| djlA | grlA | Lgor_1664 | Lgor_2928 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.706 |
| djlA | iscS | Lgor_1664 | Lgor_1517 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Cysteine desulfurase. | 0.779 |
| djlA | nifU | Lgor_1664 | Lgor_0504 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | NifU family FeS assembly SUF system protein. | 0.981 |
| djlA | nsrR_1 | Lgor_1664 | Lgor_0509 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Rrf2 family transporter protein. | 0.439 |
| djlA | sufA | Lgor_1664 | Lgor_1519 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Fe-S cluster assembly protein; Belongs to the HesB/IscA family. | 0.775 |
| dnaK | Lgor_1518 | Lgor_1186 | Lgor_1518 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Putative iron-sulpher cluster proteins NifU. | 0.917 |
| dnaK | djlA | Lgor_1186 | Lgor_1664 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.982 |
| dnaK | grlA | Lgor_1186 | Lgor_2928 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.509 |
| dnaK | iscS | Lgor_1186 | Lgor_1517 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Cysteine desulfurase. | 0.715 |
| dnaK | nifU | Lgor_1186 | Lgor_0504 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | NifU family FeS assembly SUF system protein. | 0.956 |
page 1 of 4