STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpCSn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily. (363 aa)    
Predicted Functional Partners:
ugpA
Sn-glycerol-3-phosphate transport system permease protein UgpA.
 
 0.999
ugpE
Sn-glycerol-3-phosphate transport system permease protein UgpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 0.999
ugpB
Glycerol-3-phosphate-binding periplasmic protein precursor.
 
 0.998
Lgor_1537
Hypothetical protein.
  
 
  0.940
Lgor_1538
Hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.606
qor_1
Quinone oxidoreductase.
  
    0.554
lptG
Hypothetical protein.
     
  0.540
lptF
Hypothetical protein.
     
  0.540
yecS
Transporter subunit: permease component of ABC superfamily transporter.
 
  
 0.536
Lgor_0578
Mechanosensitive ion channel MscS.
    
  0.439
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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