STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1607Phytanoyl-CoA dioxygenase (PhyH). (254 aa)    
Predicted Functional Partners:
Lgor_1609
Hypothetical protein.
       0.806
mshB
1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase.
     
 0.792
Lgor_1603
Hypothetical protein.
       0.789
Lgor_1605
Taurine catabolism dioxygenase TauD, TfdA family.
  
  
 0.786
Lgor_1610
Putative acetyltransferase YhhY.
       0.779
Lgor_1600
Hypothetical protein.
       0.778
msbA_1
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
       0.778
Lgor_1606
Hypothetical protein.
       0.778
lptB_1
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
       0.773
Lgor_1608
Hypothetical protein.
       0.773
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.