Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traLtraL protein. (241 aa)    
Predicted Functional Partners:
traM
traM protein.
     
 0.881
traK
TraK.
     
 0.880
traJ
TraJ protein.
 
   
 0.878
traI
TraI protein.
 
   
 0.875
traC
DNA primase traC.
 
   
 0.825
trbD
Conjugal transfer protein trbD.
 
   
 0.803
traF
Conjugal transfer protein TraF.
 
   
 0.802
trbJ
Conjugal transfer protein trbJ precursor.
 
   
 0.800
trbG
Conjugal transfer protein trbG precursor.
 
   
 0.796
trbE
Conjugal transfer protein trbE precursor.
 
   
 0.796
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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