Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trbLConjugal transfer protein trbL. (462 aa)    
Predicted Functional Partners:
trbJ
Conjugal transfer protein trbJ precursor.
 
  
 0.994
trbG
Conjugal transfer protein trbG precursor.
 
  
 0.993
trbF
Conjugal transfer protein trbF.
 
  
 0.993
virB
LvhB11.
 
  
 0.992
trbI
Conjugal transfer protein trbI.
 
  
 0.975
trbE
Conjugal transfer protein trbE precursor.
 
  
 0.973
trbD
Conjugal transfer protein trbD.
 
  
 0.973
Lgor_1630
Conjugal transfer protein TrbC.
    
 0.971
Lgor_1625
Conjugal transfer TrbH protein.
    
  0.970
traF
Conjugal transfer protein TraF.
 
     0.969
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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