Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phrBDeoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (471 aa)    
Predicted Functional Partners:
Lgor_0361
Tryptophan-rich sensory protein.
 
  
 0.755
Lgor_2421
Naringenin-chalcone synthase.
    
   0.738
Lgor_0362
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.647
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.583
sodB
Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.522
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.466
yeeZ
NAD-dependent epimerase/dehydratase.
     
 0.460
Lgor_0373
Flavin containing amine oxidoreductase.
 
   
 0.459
Lgor_1684
L-gulono-gamma-lactone oxidase.
   
   0.411
Lgor_0372
Hypothetical protein.
 
     0.406
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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