STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uptCType II secretion system protein. (368 aa)    
Predicted Functional Partners:
pilM
Tfp pilus assembly protein, ATPase PilM.
  
  
 0.882
pilD
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.842
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
  
  
 0.809
pilC_2
Pilus assembly protein PilC.
  
   
 0.802
pilC_1
Pilus assembly protein PilC.
  
   
 0.798
lspF
Type II secretory pathway protein LspF.
  
   
 0.728
pilO
Tfp pilus assembly protein PilO.
  
  
 0.671
ankK
Cardiac ankyrin repeat -containing protein K.
       0.670
pilN
Tfp pilus assembly protein PilN.
  
  
 0.650
pilP
Tfp pilus assembly protein PilP.
  
   
 0.592
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.