STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1713Thiamine kinase. (812 aa)    
Predicted Functional Partners:
pksL_3
Hypothetical protein.
 
     0.945
desA
Delta(12)-fatty-acid desaturase.
 
     0.942
pksL_2
Hypothetical protein.
 
 
   0.940
baeB
Putative glyoxalase II family protein.
 
 
   0.890
fabD_1
Malonyl CoA-ACP transacylase.
 
    0.804
Lgor_2533
5' DNA primase TraC.
  
    0.782
Lgor_2642
Phosphotransferase enzyme family protein.
  
 
   0.775
Lgor_2230
NHL repeat protein.
  
     0.774
Lgor_2540
Putative secreted esterase.
  
     0.774
Lgor_2546
Aminoglycoside resistance protein; Multifunctional nucleotidyltransferase/glutamate rich protein GrpB/ribosomal protein alanine acetyltransferase.
  
     0.774
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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