STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1729Hypothetical protein. (468 aa)    
Predicted Functional Partners:
bprV
Serine protease; Belongs to the peptidase S8 family.
   
  0.504
Lgor_1951
Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family protein.
   
  0.504
Lgor_2230
NHL repeat protein.
   
  0.504
Lgor_2335
Hypothetical protein.
   
  0.504
Lgor_2336
Hypothetical protein.
   
  0.504
Lgor_2348
NHL repeat protein.
   
  0.504
envC
Peptidase, M23 family.
  
  
 0.482
Lgor_1728
Cytochrome P450.
       0.473
yggG
Protease.
   
   0.469
ackA
Acetate kinase (Acetokinase); Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
  0.467
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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