Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hipA_1Putative DNA-binding transcriptional regulator. (211 aa)    
Predicted Functional Partners:
hipA_2
HipA protein.
 
 
 
 0.972
hipA
HipA protein, DNA binding regulator.
  
     0.706
Lgor_3032
Protein of unknown function DUF1016.
  
     0.580
mdlB-2
FMN-dependent dehydrogenase.
       0.563
Lgor_1763
Pyoverdine biosynthesis protein PvcA.
       0.563
Lgor_1758
Putative DNA-binding transcriptional regulator.
       0.532
Lgor_1760
Hypothetical protein.
       0.506
Lgor_1290
Filamentation induced by cAMP protein Fic.
 
     0.445
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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