Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lgor_1764Coenzyme F390 synthetase. (489 aa)    
Predicted Functional Partners:
Lgor_0655
acyl-CoA synthetase.
    
 0.728
Lgor_0702
Conserved protein of unknown function.
  
     0.625
ndoR
Xylene monooxygenase.
    
 0.593
Lgor_0465
Hypothetical protein.
  
     0.590
fpr
ferredoxin-NADP reductase.
    
 0.513
gabD
Aldehyde dehydrogenase.
    
  0.498
mmsA
Methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH), oxidoreductase.
    
  0.498
gabD1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.498
aldA
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.498
ywdH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.498
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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