Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cphA_1 | cphA_2 | Lgor_0588 | Lgor_2482 | Cyanophycin synthetase. | Cyanophycin synthetase. | 0.910 |
cphA_1 | cphA_3 | Lgor_0588 | Lgor_2524 | Cyanophycin synthetase. | Cyanophycin synthetase. | 0.901 |
cphA_1 | ftsI | Lgor_0588 | Lgor_1883 | Cyanophycin synthetase. | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | 0.729 |
cphA_1 | ftsK | Lgor_0588 | Lgor_1491 | Cyanophycin synthetase. | DNA translocase FtsK. | 0.505 |
cphA_1 | ftsL | Lgor_0588 | Lgor_1884 | Cyanophycin synthetase. | Cell division transmembrane protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | 0.597 |
cphA_1 | mraW | Lgor_0588 | Lgor_1885 | Cyanophycin synthetase. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.641 |
cphA_1 | mraZ | Lgor_0588 | Lgor_1886 | Cyanophycin synthetase. | MraZ protein; Belongs to the MraZ family. | 0.512 |
cphA_1 | murF | Lgor_0588 | Lgor_0114 | Cyanophycin synthetase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alani ne ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.982 |
cphA_2 | cphA_1 | Lgor_2482 | Lgor_0588 | Cyanophycin synthetase. | Cyanophycin synthetase. | 0.910 |
cphA_2 | cphA_3 | Lgor_2482 | Lgor_2524 | Cyanophycin synthetase. | Cyanophycin synthetase. | 0.875 |
cphA_2 | ftsI | Lgor_2482 | Lgor_1883 | Cyanophycin synthetase. | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | 0.729 |
cphA_2 | ftsK | Lgor_2482 | Lgor_1491 | Cyanophycin synthetase. | DNA translocase FtsK. | 0.505 |
cphA_2 | ftsL | Lgor_2482 | Lgor_1884 | Cyanophycin synthetase. | Cell division transmembrane protein FtsL; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | 0.597 |
cphA_2 | mraW | Lgor_2482 | Lgor_1885 | Cyanophycin synthetase. | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.641 |
cphA_2 | mraZ | Lgor_2482 | Lgor_1886 | Cyanophycin synthetase. | MraZ protein; Belongs to the MraZ family. | 0.512 |
cphA_2 | murF | Lgor_2482 | Lgor_0114 | Cyanophycin synthetase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alani ne ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.982 |
cphA_3 | cphA_1 | Lgor_2524 | Lgor_0588 | Cyanophycin synthetase. | Cyanophycin synthetase. | 0.901 |
cphA_3 | cphA_2 | Lgor_2524 | Lgor_2482 | Cyanophycin synthetase. | Cyanophycin synthetase. | 0.875 |
cphA_3 | ftsI | Lgor_2524 | Lgor_1883 | Cyanophycin synthetase. | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | 0.729 |
cphA_3 | ftsK | Lgor_2524 | Lgor_1491 | Cyanophycin synthetase. | DNA translocase FtsK. | 0.505 |
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