Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
degPDegP protease (Do-like, S2-serine-like). (357 aa)    
Predicted Functional Partners:
ycaC
YcaC related amidohydrolase.
       0.584
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
    
 0.554
Lgor_1897
Hypothetical protein.
       0.548
Lgor_2437
Ankyrin repeats (3 copies).
  
 
  0.531
Lgor_1898
Hypothetical protein.
       0.526
letS_1
Legionella transmission sensor LetS.
  
  
 0.519
Lgor_1112
5'-nucleotidase.
  
     0.503
fabG_5
3-hydroxyacyl-CoA dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  0.494
Lgor_1279
Substrate of the Dot/Icm secretion system.
  
     0.481
rseP_1
Metalloprotease.
  
   
 0.463
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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