STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degPDegP protease (Do-like, S2-serine-like). (357 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
    
 0.653
Lgor_0655
acyl-CoA synthetase.
 
 
 0.624
letS_1
Legionella transmission sensor LetS.
  
  
 0.590
ycaC
YcaC related amidohydrolase.
  
    0.573
Lgor_1897
Hypothetical protein.
       0.529
Lgor_1898
Hypothetical protein.
       0.522
Lgor_2365
Ankyrin repeat protein.
 
 
 0.506
Lgor_1112
5'-nucleotidase.
  
     0.503
Lgor_2437
Ankyrin repeats (3 copies).
  
 
   0.496
Lgor_1279
Substrate of the Dot/Icm secretion system.
  
     0.481
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.