Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1901Sel-1 protein. (108 aa)    
Predicted Functional Partners:
Lgor_1902
General secretion pathway protein C.
 
     0.909
ydgA
Putative membrane protein YdgA-like protein.
  
     0.662
dotG_1
IcmE/DotG protein.
  
     0.636
Lgor_3283
uracil-DNA glycosylase.
  
     0.630
Lgor_1859
Protein-tyrosine phosphatase.
  
     0.623
Lgor_0942
cNMP-binding protein.
   
   0.614
lvrA
Legionella vir region protein.
  
     0.606
Lgor_2216
Putative virulence protein.
  
     0.602
Lgor_2114
Putative helicase/relaxase.
  
     0.555
dotA
Defect in organelle trafficking protein DotA.
  
     0.546
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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