STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_1902General secretion pathway protein C. (167 aa)    
Predicted Functional Partners:
lspD_2
Type II protein secretion LspD.
 
 
 0.994
Lgor_0095
Type II/III secretion system protein.
 
 
 0.951
lspD_1
Type II protein secretion LspD.
  
 
 0.904
Lgor_1901
Sel-1 protein.
 
     0.855
Lgor_1026
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.849
lspI
Type II secretory pathway protein LspI.
 
  
 0.839
lspK
Type II secretory pathway protein LspK.
 
  
 0.836
Lgor_1027
General secretion pathway protein.
 
   
 0.824
lspJ
Type II secretory pathway protein LspJ.
 
  
 0.783
lspH
Type II secretory pathway protein LspH.
 
  
 0.773
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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