Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
aprXSubtilisin-like serine protease. (598 aa)    
Predicted Functional Partners:
Lgor_1951
Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family protein.
 
 0.806
secA_2
Coiled-coil protein.
 
     0.771
Lgor_2778
Hypothetical protein.
  
     0.759
iraA
Small-molecule methyltransferase IraA.
  
     0.756
Lgor_0559
Ankyrin repeats (3 copies).
  
     0.755
ankK
Cardiac ankyrin repeat -containing protein K.
  
   0.750
Lgor_1151
CAAX amino terminal protease self- immunity.
  
     0.749
Lgor_0671
Sphingomyelin phosphodiesterase.
  
     0.747
Lgor_2358
Hypothetical protein.
  
  
 0.742
Lgor_0091
Hypothetical protein.
  
     0.735
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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