STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yecDIsochorismatase. (194 aa)    
Predicted Functional Partners:
Lgor_0655
acyl-CoA synthetase.
  
 0.835
Lgor_2015
Hypothetical protein.
       0.791
trpE
Anthranilate synthase.
    
 0.782
yabJ_1
Endoribonuclease L-PSP.
  
 
 0.626
acoC
Lipolytic protein.
 
 0.622
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
  
 
 0.601
thiO
Thiamine biosynthesis oxidoreductase ThiO.
   
 
  0.580
pncA
Nicotinamidase/pyrazinamidase.
     
 0.576
Lgor_0059
Lipase LipA (L, pneumophila).
  
 0.571
catD
Alpha/beta hydrolase.
  
 0.571
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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