STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hopD2Tyrosine phosphatase II superfamily protein. (328 aa)    
Predicted Functional Partners:
Lgor_0942
cNMP-binding protein.
  
 
 
 0.948
yjeA
Endo-1,4-beta-xylanase.
  
 0.911
legA
Ankyrin-repeat containing protein, substrate of the Dot/Icm secretion system.
  
 
  0.795
bcp
Acetylpolyamine aminohydrolase.
  
 
 
 0.780
Lgor_0046
Ankyrin repeat protein.
  
 
  0.773
Lgor_0318
Hypothetical protein.
    
 0.769
Lgor_0476
Protein phosphatase 2C.
  
 
   0.753
Lgor_1583
Acyltransferase.
 
 
  0.739
Lgor_1864
Hypothetical protein.
  
 
   0.710
Lgor_0455
Calcium-transporting ATPase.
  
 
   0.704
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.