STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_2038O-methyltransferase. (326 aa)    
Predicted Functional Partners:
Lgor_0655
acyl-CoA synthetase.
 
  
 0.808
Lgor_2039
Eukaryotic small stress protein PASS1.
 
    0.806
pksL_4
Polyketide synthase.
  
  
 0.689
pksJ_1
Polyketide synthase, type I.
 
  
 0.608
Lgor_0477
acyl-CoA synthetase.
 
  
 0.519
pksL_1
Polyketide synthase.
  
  
 0.501
pdhB_1
Pyruvate/2-oxoglutarate dehydrogenase subunit E1.
     
  0.500
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
 
 0.498
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
    
 0.482
ispB
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
    
 0.479
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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