Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rtcBReplication factor C subunit (activator I); Belongs to the RtcB family. (476 aa)    
Predicted Functional Partners:
Lgor_2047
Hypothetical protein.
 
 0.995
alkA
DNA-3-methyladenine glycosylase.
       0.622
dbpA
ATP-dependent RNA helicase DbpA; Belongs to the DEAD box helicase family.
   
  0.504
deaD
ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
   
  0.504
rhlE
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
   
  0.504
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
  
 0.487
hpcD
5-carboxymethyl-2-hydroxymuconate Delta-isomerase.
       0.478
araC
AraC family transcriptional regulator.
       0.422
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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