Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_2103Pyoverdine biosynthesis protein PvcB. (256 aa)    
Predicted Functional Partners:
Lgor_2102
Pyoverdine biosynthesis protein PvcA.
 
 
 0.997
Lgor_0655
acyl-CoA synthetase.
 
 
 0.886
Lgor_2104
Cytochrome P450.
 
  
  0.873
Lgor_2353
Hypothetical protein.
  
     0.713
Lgor_0762
Hypothetical protein.
  
     0.709
Lgor_1199
Hypothetical protein.
  
     0.704
Lgor_0477
acyl-CoA synthetase.
 
  
 0.701
Lgor_0650
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
 
    0.685
legA
Ankyrin-repeat containing protein, substrate of the Dot/Icm secretion system.
  
     0.681
Lgor_0455
Calcium-transporting ATPase.
  
     0.657
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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