STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_2141Hypothetical protein; C-terminal part of DNA polymerase, bacteriophage-type. (212 aa)    
Predicted Functional Partners:
ssb
Single-strand binding protein (SSB) (Helix-destabilizing protein).
    
   0.724
envC
Peptidase, M23 family.
   
   0.620
Lgor_3283
uracil-DNA glycosylase.
     
 0.616
Lgor_1072
Glycoprotease.
  
    0.611
flgC
Flagellar basal body rod protein FlgC.
    
   0.511
aroK_2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.503
mltD
Membrane-bound lytic murein transglycosylase D.
   
   0.452
argF
Ornithine carbamoyltransferase.
    
  0.425
Lgor_2140
Hypothetical protein.
       0.417
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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