STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxHCoenzyme F420-reducing hydrogenase, alpha subunit. (430 aa)    
Predicted Functional Partners:
hoxY
Sulfhydrogenase subunit delta.
 
 0.999
Lgor_2155
Hydrogenase subunit.
 
  
 0.983
hydG
Hydrogenase/sulfur reductase gamma subunit.
 
  
 0.969
vhtD
Hydrogenase expression/formation protein.
 
  
 0.961
nqo1
NADH dehydrogenase I subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 0.911
nuoE
NADH dehydrogenase I subunit E.
   
 
 0.811
Lgor_2312
(2Fe-2S) ferredoxin.
    
   0.712
sdhB
Succinate dehydrogenase iron-sulfur subunit.
    
 0.677
gmr_2
Regulatory protein (GGDEF domain).
    
  0.668
fadH
2,4-dienoyl-CoA reductase.
    
  0.563
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.