STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_2165Hypothetical protein. (152 aa)    
Predicted Functional Partners:
ndoR
Xylene monooxygenase.
    
  0.723
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.657
Lgor_0898
Putative Ser/Thr protein kinase.
  
     0.629
Lgor_1744
Glutaredoxin 2.
  
     0.596
aidB
acyl-CoA dehydrogenase.
       0.570
chiD
Chitinase.
 
     0.556
Lgor_0655
acyl-CoA synthetase.
     
  0.479
cyaA
Fused adenylate cyclase/two component hybrid sensor/regulator.
     
  0.450
cph2_5
Regulatory protein (GGDEF and EAL domains).
     
  0.436
dosC_1
Regulatory protein (GGDEF, PAS, PAC domains).
     
  0.436
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.