Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
pbpE_1Beta-lactamase. (536 aa)    
Predicted Functional Partners:
pbpX
Putative penicillin-binding protein PbpX.
  
     0.642
Lgor_0655
acyl-CoA synthetase.
  
  
 0.604
Lgor_2225
Hypothetical protein.
       0.585
anmK
anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
  
  0.534
chiA1
Chitinase A1 precursor.
  
  
  0.499
Lgor_2223
Hypothetical protein.
       0.472
ybbD
N-acetyl-beta-glucosaminidase.
 
 
  0.456
nagZ
Beta N-acetyl-glucosaminidase.
 
 
  0.451
Lgor_2517
Glycosyl hydrolase.
 
 
  0.451
amiB
N-acetylmuramoyl-L-alanine amidase.
    
 0.446
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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