Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lvgAVirulence protein LvgA. (215 aa)    
Predicted Functional Partners:
Lgor_0145
Protein IcmS.
    
 
 0.954
icmW
Intracellular multiplication protein IcmW.
    
 
 0.954
Lgor_0141
Protein IcmO (DotL).
    
 
 0.811
Lgor_2684
Phospholipase, patatin family.
    
   0.775
Lgor_2271
FeoC like transcriptional regulator.
       0.711
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
       0.711
feoA
Ferrous iron transporter A.
       0.711
dotD
Lipoprotein DotD.
      
 0.621
dotC
Defect in organelle trafficking lipoprotein DotC.
      
 0.621
yhcM
ATPase.
       0.442
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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