Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yggR-2DotB. (376 aa)    
Predicted Functional Partners:
dotC
Defect in organelle trafficking lipoprotein DotC.
 
   
 0.983
dotD
Lipoprotein DotD.
     
 0.946
pilC_1
Pilus assembly protein PilC.
 
   
 0.796
pilC_2
Pilus assembly protein PilC.
 
   
 0.784
Lgor_0142
IcmP protein.
 
   
 0.778
lspF
Type II secretory pathway protein LspF.
 
   
 0.775
Lgor_0131
Protein IcmB (DotO).
  
   
 0.758
Lgor_0141
Protein IcmO (DotL).
 
   
 0.751
Lgor_0138
Protein IcmL (DotI).
  
   
 0.740
Lgor_0132
IcmJ protein.
  
   
 0.738
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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