Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
icmWIntracellular multiplication protein IcmW. (151 aa)    
Predicted Functional Partners:
Lgor_0145
Protein IcmS.
    
 
 0.954
lvgA
Virulence protein LvgA.
    
 
 0.954
icmX
Intracellular multiplication protein IcmX.
     
 0.948
Lgor_0141
Protein IcmO (DotL).
    
 
 0.913
icmV
Intracellular multiplication protein IcmV.
     
 0.896
dotC
Defect in organelle trafficking lipoprotein DotC.
      
 0.833
dotA
Defect in organelle trafficking protein DotA.
     
 0.752
traG
Conjugal transfer protein TraG.
    
 
 0.625
traD_2
Conjugative transfer protein TraD.
    
 
 0.625
dotF
Component of the Dot/Icm secretion system.
      
 0.621
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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