STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apxIB_1Toxin secretion ATP binding protein. (731 aa)    
Predicted Functional Partners:
lssD
Secretion system protein D.
 0.997
Lgor_2334
Hypothetical protein.
  
 
 0.818
tolC
Outer membrane protein TolC.
  
 
 0.759
Lgor_0868
Outer membrane channel protein.
  
 
 0.610
Lgor_2335
Hypothetical protein.
  
 
 0.577
Lgor_2336
Hypothetical protein.
  
 
 0.577
cvaA
Putative membrane fusion protein.
  
  0.537
queH
Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
 
     0.518
macA_3
Hemolysin D.
   
 0.514
Lgor_0183
Hemolysin D.
   
  0.502
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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