Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_2348NHL repeat protein. (476 aa)    
Predicted Functional Partners:
pcp_2
Serine protease, subtilase family.
       0.727
ftsK
DNA translocase FtsK.
    
 
 0.706
aprX
Subtilisin-like serine protease.
  
 
 0.659
Lgor_0842
BNR/Asp-box repeat protein.
  
     0.584
Lgor_2112
Outer membrane efflux protein.
  
  
  0.535
ctpA
Carboxy-terminal protease; Belongs to the peptidase S41A family.
   
  0.504
Lgor_1729
Hypothetical protein.
   
  0.504
lasB
Virulence metalloprotease; Extracellular zinc metalloprotease.
   
 0.501
Lgor_1275
LphB.
  
  
 0.485
argT_2
Arginine-binding periplasmic protein.
       0.425
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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