Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lgor_1518 | djlA | Lgor_1518 | Lgor_1664 | Putative iron-sulpher cluster proteins NifU. | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.981 |
| Lgor_1518 | iscS | Lgor_1518 | Lgor_1517 | Putative iron-sulpher cluster proteins NifU. | Cysteine desulfurase. | 0.999 |
| Lgor_1518 | ndoR | Lgor_1518 | Lgor_2387 | Putative iron-sulpher cluster proteins NifU. | Xylene monooxygenase. | 0.933 |
| Lgor_1518 | nsrR | Lgor_1518 | Lgor_2385 | Putative iron-sulpher cluster proteins NifU. | DNA-binding transcriptional regulator. | 0.624 |
| Lgor_1518 | nsrR_1 | Lgor_1518 | Lgor_0509 | Putative iron-sulpher cluster proteins NifU. | Rrf2 family transporter protein. | 0.624 |
| djlA | Lgor_1518 | Lgor_1664 | Lgor_1518 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Putative iron-sulpher cluster proteins NifU. | 0.981 |
| djlA | iscS | Lgor_1664 | Lgor_1517 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Cysteine desulfurase. | 0.779 |
| djlA | ndoR | Lgor_1664 | Lgor_2387 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Xylene monooxygenase. | 0.473 |
| djlA | nifU | Lgor_1664 | Lgor_0504 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | NifU family FeS assembly SUF system protein. | 0.981 |
| djlA | nsrR | Lgor_1664 | Lgor_2385 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | DNA-binding transcriptional regulator. | 0.439 |
| djlA | nsrR_1 | Lgor_1664 | Lgor_0509 | Molecular chaperone DnaJ; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Rrf2 family transporter protein. | 0.439 |
| fliG | gmr_2 | Lgor_1500 | Lgor_1047 | Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Regulatory protein (GGDEF domain). | 0.965 |
| fliG | nsrR | Lgor_1500 | Lgor_2385 | Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | DNA-binding transcriptional regulator. | 0.408 |
| fliG | nsrR_1 | Lgor_1500 | Lgor_0509 | Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | Rrf2 family transporter protein. | 0.511 |
| glbN | ndoR | Lgor_2386 | Lgor_2387 | Hemoglobin (protozoan/cyanobacterial globin family). | Xylene monooxygenase. | 0.930 |
| glbN | nsrR | Lgor_2386 | Lgor_2385 | Hemoglobin (protozoan/cyanobacterial globin family). | DNA-binding transcriptional regulator. | 0.588 |
| gmr_2 | fliG | Lgor_1047 | Lgor_1500 | Regulatory protein (GGDEF domain). | Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.965 |
| gmr_2 | ndoR | Lgor_1047 | Lgor_2387 | Regulatory protein (GGDEF domain). | Xylene monooxygenase. | 0.685 |
| gmr_2 | nsrR | Lgor_1047 | Lgor_2385 | Regulatory protein (GGDEF domain). | DNA-binding transcriptional regulator. | 0.430 |
| gmr_2 | nsrR_1 | Lgor_1047 | Lgor_0509 | Regulatory protein (GGDEF domain). | Rrf2 family transporter protein. | 0.430 |
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