STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_2401Hypothetical protein. (408 aa)    
Predicted Functional Partners:
Lgor_2400
GNAT family acetyltransferase.
       0.727
Lgor_0655
acyl-CoA synthetase.
   
 
 0.537
ndoR
Xylene monooxygenase.
     
 0.524
Lgor_2420
Methyltransferase.
    
  0.491
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
    
  0.491
ubiB
Ubiquinone biosynthesis protein; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
    
 0.427
Lgor_2446
Sterol desaturase-related protein.
   
  0.414
lgrD_1
Peptide synthetase, non-ribosomal.
     
 0.413
Lgor_0650
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
     
 0.411
lgrD_2
Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.400
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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