Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lgor_2402Oxidoreductase. (387 aa)    
Predicted Functional Partners:
pksM
Hypothetical protein.
  
 
  0.704
Lgor_2018
Hypothetical protein.
  
     0.703
Lgor_1592
Hydrolase.
  
 
  0.654
pksL_4
Polyketide synthase.
  
 0.654
Lgor_0655
acyl-CoA synthetase.
  
 
 0.645
Lgor_0724
Prolyl oligopeptidase; Belongs to the UPF0255 family.
  
     0.640
tcmN
O-methyltransferase.
  
 
 0.618
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
    
  0.600
Lgor_3253
5-carboxyvanillate decarboxylase.
 
    0.593
pksL_3
Hypothetical protein.
  
 
  0.572
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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