STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_2428Hypothetical protein; Alpha-2-macroglobulin family N-terminal region. (1914 aa)    
Predicted Functional Partners:
pbpC
Penicillin binding protein 1C.
   
 0.981
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.649
Lgor_2778
Hypothetical protein.
  
    0.531
Lgor_2023
GNAT family acetyltransferase.
  
     0.444
Lgor_2429
Transmembrane protein.
       0.438
secA_2
Coiled-coil protein.
  
     0.434
yjeA
Endo-1,4-beta-xylanase.
  
 
   0.419
Lgor_2171
Hypothetical protein.
  
     0.418
luxR_2
LuxR family transcriptional regulator.
  
     0.417
Lgor_1151
CAAX amino terminal protease self- immunity.
  
     0.416
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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