STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbO_2Oxidoreductase with NAD(P)-binding Rossmann-fold domain protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (307 aa)    
Predicted Functional Partners:
pksJ_1
Polyketide synthase, type I.
  
 0.881
Lgor_0477
acyl-CoA synthetase.
    
 0.879
pksL_4
Polyketide synthase.
  
 0.878
Lgor_0655
acyl-CoA synthetase.
    
 0.850
fabG_4-2
Pteridine reductase.
  
 
  0.758
fabG_1
3-oxoacyl-ACP reductase.
  
 
  0.719
Lgor_1728
Cytochrome P450.
  
 0.719
pksL_1
Polyketide synthase.
   
 0.703
yueD_1
Sepiapterin reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.698
fabG_11
Acetyoacetyl CoA reductase.
  
 
  0.688
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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