Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lgor_2446Sterol desaturase-related protein. (404 aa)    
Predicted Functional Partners:
alkB2
Alkane monooxygenase.
 
 
 0.768
Lgor_0708
Transmembrane protein.
 
     0.705
yjjG
Haloacid dehalogenase.
       0.703
gmr_2
Regulatory protein (GGDEF domain).
   
    0.610
Lgor_1354
Hypothetical protein.
   
 0.603
pilD
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
       0.578
Lgor_2420
Methyltransferase.
  
  
  0.548
Lgor_2104
Cytochrome P450.
  
 0.545
cph2_5
Regulatory protein (GGDEF and EAL domains).
  
    0.515
Lgor_1728
Cytochrome P450.
  
 0.514
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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