Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lgor_2550Diguanylate cyclase. (131 aa)    
Predicted Functional Partners:
pleD
Sensor histidine kinase.
      0.832
arcB_4
Sensory histidine-kinase / response regulator.
  
 0.792
arcB_1
Sensory box histidine kinase/response regulator.
  
 0.792
gmr_2
Regulatory protein (GGDEF domain).
  
 0.649
letS_2
Legionella transmission sensor LetS.
  
 
 0.634
cph2_5
Regulatory protein (GGDEF and EAL domains).
  
 0.602
gmr_4
Sensory box/GGDEF family protein.
   
   0.591
letS_1
Legionella transmission sensor LetS.
  
 
 0.505
gmr_3
Sensory box (GGDEF/EAL domain) regulatory protein.
  
 0.495
cheA
Chemotaxis histidine kinase.
   
 
 0.460
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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