STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pleDSensor histidine kinase. (158 aa)    
Predicted Functional Partners:
cph2_5
Regulatory protein (GGDEF and EAL domains).
 
 0.930
cph2_1
Inner membrane protein/sensory box protein LssE.
 
 0.895
arcB_1
Sensory box histidine kinase/response regulator.
 
 0.874
arcB_4
Sensory histidine-kinase / response regulator.
 
 0.868
Lgor_2550
Diguanylate cyclase.
      0.832
ycgG_1
Regulatory protein (EAL domain).
  
 
  0.832
ycgG_2
Signal transduction protein (EAL/GGDEF domain protein).
  
 
  0.830
cph2_4
Regulatory protein (GGDEF and EAL domains).
  
  0.813
gmr_2
Regulatory protein (GGDEF domain).
 
0.791
rpfG_2
Metal dependent phosphohydrolase.
 
 
   0.784
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.