STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traI_2Putative conjugative transfer protein TraI. (1944 aa)    
Predicted Functional Partners:
addA
UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
 0.997
traD_2
Conjugative transfer protein TraD.
 
   
 0.926
Lgor_2583
Putative sex pilus assembly and mating pair protein TraG.
 
     0.877
Lgor_2585
Putative conjugative transfer protein TrbB.
 
   
 0.877
Lgor_2588
Putative conjugative transfer protein TrbC.
 
     0.874
Lgor_2587
Conjugal transfer mating pair stabilization protein TraN.
 
    0.873
traC_3
Putative conjugative transfer protein TraC.
 
   
 0.869
dnaN
DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...]
  
 
 0.867
Lgor_2594
Putative conjugative transfer protein TraB.
 
     0.862
Lgor_2586
Putative conjugative transfer protein TraF.
 
   
 0.841
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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