Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_2608Hypothetical protein. (363 aa)    
Predicted Functional Partners:
Lgor_2607
Hypothetical protein.
    
  0.877
Lgor_2606
Hypothetical protein.
       0.869
kinE
Sensor histidine kinase.
       0.869
Lgor_2610
Hypothetical protein.
       0.869
Lgor_2603
Hypothetical protein.
       0.560
Lgor_2604
Hypothetical protein.
       0.560
Lgor_2605
Hypothetical protein.
       0.560
yecS
Transporter subunit: permease component of ABC superfamily transporter.
    
 0.526
artM
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
   
 
 0.509
Lgor_2911
HEAT repeat protein.
     
  0.455
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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