Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_2662Ankyrin repeats (3 copies). (510 aa)    
Predicted Functional Partners:
Lgor_1550
Eukaryotic huntingtin interacting protein B.
  
 
  0.791
Lgor_2394
Hypothetical protein.
  
     0.767
Lgor_2230
NHL repeat protein.
  
     0.757
Lgor_1713
Thiamine kinase.
  
     0.754
recX-2
Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family.
  
     0.752
Lgor_0360
Outer membrane component of multidrug efflux pump.
  
     0.751
Lgor_2540
Putative secreted esterase.
  
     0.751
traI_2
Putative conjugative transfer protein TraI.
  
 
   0.751
Lgor_2640
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.742
fixL_1
Two-component sensor histidine kinase.
  
     0.738
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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