Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgor_2670 | cpxA_3 | Lgor_2670 | Lgor_2675 | TrpH protein. | Sensor histidine kinase. | 0.557 |
Lgor_2670 | cpxR | Lgor_2670 | Lgor_2674 | TrpH protein. | Transcriptional regulatory protein CpxR. | 0.537 |
Lgor_2670 | ybeX | Lgor_2670 | Lgor_2673 | TrpH protein. | Protein involved in divalent ion export. | 0.557 |
Lgor_2670 | ybeY | Lgor_2670 | Lgor_2672 | TrpH protein. | Metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.558 |
Lgor_2670 | ybeZ | Lgor_2670 | Lgor_2671 | TrpH protein. | Phosphate starvation-inducible protein PhoH. | 0.558 |
Lgor_2670 | yciO_1 | Lgor_2670 | Lgor_2669 | TrpH protein. | Translation factor; Belongs to the SUA5 family. | 0.844 |
cdd | cpxA_3 | Lgor_2677 | Lgor_2675 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Sensor histidine kinase. | 0.505 |
cdd | cpxR | Lgor_2677 | Lgor_2674 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Transcriptional regulatory protein CpxR. | 0.480 |
cdd | era | Lgor_2677 | Lgor_1805 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.847 |
cdd | ybeX | Lgor_2677 | Lgor_2673 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Protein involved in divalent ion export. | 0.505 |
cdd | ybeY | Lgor_2677 | Lgor_2672 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.657 |
cdd | ybeZ | Lgor_2677 | Lgor_2671 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Phosphate starvation-inducible protein PhoH. | 0.703 |
clpX | ybeZ | Lgor_2867 | Lgor_2671 | ATP-dependent Clp protease, ATP binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | Phosphate starvation-inducible protein PhoH. | 0.603 |
cpxA_3 | Lgor_2670 | Lgor_2675 | Lgor_2670 | Sensor histidine kinase. | TrpH protein. | 0.557 |
cpxA_3 | cdd | Lgor_2675 | Lgor_2677 | Sensor histidine kinase. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.505 |
cpxA_3 | cpxR | Lgor_2675 | Lgor_2674 | Sensor histidine kinase. | Transcriptional regulatory protein CpxR. | 0.986 |
cpxA_3 | ybeX | Lgor_2675 | Lgor_2673 | Sensor histidine kinase. | Protein involved in divalent ion export. | 0.791 |
cpxA_3 | ybeY | Lgor_2675 | Lgor_2672 | Sensor histidine kinase. | Metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.800 |
cpxA_3 | ybeZ | Lgor_2675 | Lgor_2671 | Sensor histidine kinase. | Phosphate starvation-inducible protein PhoH. | 0.808 |
cpxA_3 | yciO_1 | Lgor_2675 | Lgor_2669 | Sensor histidine kinase. | Translation factor; Belongs to the SUA5 family. | 0.550 |
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