Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgor_0655 | acpP | Lgor_0655 | Lgor_2715 | acyl-CoA synthetase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.991 |
Lgor_0655 | bioH | Lgor_0655 | Lgor_3241 | acyl-CoA synthetase. | Biotin biosynthesis protein BioH. | 0.947 |
Lgor_0655 | fabD_1 | Lgor_0655 | Lgor_1706 | acyl-CoA synthetase. | Malonyl CoA-ACP transacylase. | 0.998 |
Lgor_0655 | fabD_2 | Lgor_0655 | Lgor_2717 | acyl-CoA synthetase. | Malonyl CoA-ACP transacylase. | 0.931 |
Lgor_0655 | fabD_3 | Lgor_0655 | Lgor_2844 | acyl-CoA synthetase. | Malonyl CoA-ACP transacylase. | 0.989 |
Lgor_0655 | fabF-2 | Lgor_0655 | Lgor_0776 | acyl-CoA synthetase. | 3-oxoacyl-ACP synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.959 |
Lgor_0655 | fabF_2 | Lgor_0655 | Lgor_2714 | acyl-CoA synthetase. | 3-oxoacyl-ACP synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.945 |
Lgor_0655 | fabF_3 | Lgor_0655 | Lgor_0234 | acyl-CoA synthetase. | Hypothetical protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.943 |
Lgor_0655 | fabZ | Lgor_0655 | Lgor_0029 | acyl-CoA synthetase. | (3R)-hydroxymyristoyl-ACP dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.774 |
Lgor_0655 | rplM | Lgor_0655 | Lgor_2311 | acyl-CoA synthetase. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
acpP | Lgor_0655 | Lgor_2715 | Lgor_0655 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | acyl-CoA synthetase. | 0.991 |
acpP | bioH | Lgor_2715 | Lgor_3241 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Biotin biosynthesis protein BioH. | 0.976 |
acpP | fabD_1 | Lgor_2715 | Lgor_1706 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Malonyl CoA-ACP transacylase. | 0.993 |
acpP | fabD_2 | Lgor_2715 | Lgor_2717 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Malonyl CoA-ACP transacylase. | 0.967 |
acpP | fabD_3 | Lgor_2715 | Lgor_2844 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Malonyl CoA-ACP transacylase. | 0.946 |
acpP | fabF-2 | Lgor_2715 | Lgor_0776 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 3-oxoacyl-ACP synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.916 |
acpP | fabF_2 | Lgor_2715 | Lgor_2714 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 3-oxoacyl-ACP synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.968 |
acpP | fabF_3 | Lgor_2715 | Lgor_0234 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Hypothetical protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.914 |
acpP | fabZ | Lgor_2715 | Lgor_0029 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | (3R)-hydroxymyristoyl-ACP dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.990 |
acpP | rplM | Lgor_2715 | Lgor_2311 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.924 |
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