Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mdlBMultidrug ABC transporter ATPase/permease. (593 aa)    
Predicted Functional Partners:
bla_1
Beta-lactamase AmpS.
 
     0.808
pksL_4
Polyketide synthase.
   
 0.649
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.598
Lgor_2615
Initiator Replication protein.
  
     0.566
lptB_1
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
  
     0.549
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
  
   0.549
pksJ_1
Polyketide synthase, type I.
  
 0.538
bcp
Acetylpolyamine aminohydrolase.
  
  0.526
Lgor_1411
Photosystem I assembly protein Ycf3.
  
 
  0.518
aas
Fused 2-acylglycerophospho-ethanolamine acyl transferase, acyl-acyl carrier protein synthetase.
    
 0.513
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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